PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20632_iso_1
Common Nameorca3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 184aa    MW: 20281.1 Da    PI: 4.8161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20632_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-2098149256
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                          +ykGVr+++ +g+++AeIrdp++ g   r++lg++ t+e+Aa a++aa+ +++g+
  cra_locus_20632_iso_1_len_551_ver_3  98 RYKGVRRRP-WGKFAAEIRDPKKKG--SRIWLGTYETPEDAALAYDAAAFNMRGA 149
                                          7********.**********96643..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.71E-2098158No hitNo description
SMARTSM003802.5E-3798162IPR001471AP2/ERF domain
PROSITE profilePS5103223.9698156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3298157IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2398157IPR016177DNA-binding domain
PfamPF008471.4E-1498148IPR001471AP2/ERF domain
PRINTSPR003677.7E-1099110IPR001471AP2/ERF domain
PRINTSPR003677.7E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
XEEIISVSDR FLLSLIEEHL LSDNSDDSSS ELTSTEENWE EIFADFLNWS GSEIQKRGSP  60
SSESCQSNSM AESCQEDSVV GTPPEAAAGG GCSKDWNRYK GVRRRPWGKF AAEIRDPKKK  120
GSRIWLGTYE TPEDAALAYD AAAFNMRGAK ARLNFPHLIG SNISGPVRVN PRKRFPAEPS  180
TTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2899161668ATERF1
3gcc_A4e-2899161668ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325364.15e-48PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-41ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLQ9LDB61e-133Q9LDB6_CATRO; AP2-domain DNA-binding protein
STRINGSolyc01g090310.2.12e-47(Solanum lycopersicum)
Publications ? help Back to Top
  1. van der Fits L,Memelink J
    ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism.
    Science, 2000. 289(5477): p. 295-7
    [PMID:10894776]